STRINGSTRING
NGR_c01500 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_c01500" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_c01500annotation not available (172 aa)    
Predicted Functional Partners:
rpoH
annotation not available (301 aa)
   
 
 
  0.659
NGR_c26550
annotation not available (212 aa)
   
          0.654
NGR_c33290
annotation not available (561 aa)
   
     
  0.645
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (684 aa)
   
 
 
  0.639
NGR_c04280
annotation not available (77 aa)
 
     
  0.622
NGR_c09680
annotation not available (168 aa)
   
     
  0.619
atpF1
ATP synthase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family (161 aa)
   
          0.615
cobT
annotation not available (630 aa)
   
          0.610
ccrM
Adenine-specificmethyltransferase SmeIP; M.SmeI; M.CcrMI; Belongs to the N(4)/N(6)-methyltransferase family (376 aa)
   
     
  0.596
NGR_c32660
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (288 aa)
       
 
  0.590
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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