STRINGSTRING
aspB protein (Sinorhizobium fredii NGR234) - STRING interaction network
"aspB" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspBannotation not available (385 aa)    
Predicted Functional Partners:
lysC
annotation not available (424 aa)
 
  0.919
NGR_c31300
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate (321 aa)
   
 
  0.914
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate (532 aa)
         
  0.903
mdh
annotation not available (358 aa)
         
    0.900
NGR_c20350
annotation not available (381 aa)
         
    0.900
gltB1
annotation not available (1574 aa)
   
 
  0.703
thrA
annotation not available (440 aa)
   
 
  0.570
hisA
annotation not available (245 aa)
   
   
  0.517
NGR_c11100
annotation not available (255 aa)
              0.507
aroQ2
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate; Belongs to the type-II 3-dehydroquinase family (148 aa)
         
  0.477
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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