STRINGSTRING
exbD protein (Sinorhizobium fredii NGR234) - STRING interaction network
"exbD" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbDannotation not available (141 aa)    
Predicted Functional Partners:
exbB
annotation not available (316 aa)
 
  0.998
tolQ
annotation not available (239 aa)
 
  0.923
NGR_c24550
annotation not available (306 aa)
   
 
  0.826
NGR_c17170
annotation not available (758 aa)
   
 
  0.698
ribA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family (366 aa)
         
  0.668
tolR
annotation not available (150 aa)
 
 
 
0.660
NGR_c13510
annotation not available (219 aa)
 
          0.644
tolB1
Protein TolB; Involved in the TonB-independent uptake of proteins (457 aa)
 
 
  0.610
NGR_c27790
annotation not available (176 aa)
 
 
 
  0.577
tolC
annotation not available (456 aa)
 
 
 
  0.551
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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