STRINGSTRING
NGR_c15060 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_c15060" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_c15060annotation not available (301 aa)    
Predicted Functional Partners:
NGR_c21930
annotation not available (259 aa)
   
          0.703
NGR_c08120
annotation not available (145 aa)
   
          0.592
NGR_c01020
annotation not available (187 aa)
   
 
      0.581
NGR_a02760
Uncharacterized protein y4kT; y4kT; NGR234_207 (516 aa)
     
 
  0.546
shc
Probable squalene--hopene cyclase; Catalyzes the cyclization of squalene into hopene. Probably part of an operon y4aABCD involved in the synthesis of an isoprenoid compound; Belongs to the terpene cyclase/mutase family (647 aa)
     
 
  0.546
NGR_c29550
annotation not available (125 aa)
   
          0.540
gltB1
annotation not available (1574 aa)
           
  0.514
NGR_c19330
annotation not available (976 aa)
   
          0.510
NGR_c10300
annotation not available (397 aa)
   
          0.507
NGR_c13830
annotation not available (279 aa)
   
 
  0.504
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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