STRINGSTRING
rpe protein (Sinorhizobium fredii NGR234) - STRING interaction network
"rpe" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpeannotation not available (224 aa)    
Predicted Functional Partners:
NGR_a02440
Putative uncharacterized transketolase family protein y4mO; y4mO; NGR234_246; Belongs to the transketolase family (279 aa)
   
  0.984
NGR_c28060
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate (658 aa)
  0.980
cbbT
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate (663 aa)
  0.980
rpiA
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate (231 aa)
   
  0.965
NGR_c17890
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH; Belongs to the 6-phosphogluconate dehydrogenase family (476 aa)
   
  0.943
xylB
annotation not available (484 aa)
 
  0.931
NGR_a02450
Putative uncharacterized transketolase family protein y4mN; y4mN; NGR234_245 (345 aa)
 
   
  0.928
NGR_c05700
annotation not available (935 aa)
       
  0.920
NGR_c06300
L-ribulose-5-phosphate 4-epimerase; Phosphoribuloseisomerase (236 aa)
       
  0.918
NGR_c06310
annotation not available (538 aa)
     
  0.912
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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