STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_a03360Uncharacterized protein y4hN; Identical to y4hN of pNGR234a; Belongs to the transposase 8 family (144 aa)    
Predicted Functional Partners:
NGR_a03350
Uncharacterized protein y4hO; Identical to y4hO of pNGR234a; Belongs to the transposase 34 family
     0.912
NGR_a03340
Uncharacterized protein y4hP; Identical to y4hP of pNGR234a; Belongs to the transposase 25 family
 
     0.868
NGR_c17710
Putative transposase number 4 for insertion sequence NGRIS-16a; Identical to y4hQ of pNGR234a
 
     0.792
AAB92454.1
y4hP; NGR234_145
 
     0.581
NGR_a03000
Uncharacterized protein y4jO; y4jO; NGR234_181
  
     0.560
NGR_a01800
Uncharacterized protein y4rG; y4rG; NGR234_330; Belongs to the transposase 8 family
  
     0.541
NGR_c05860
annotation not available
  
     0.528
AAB91842.1
y4sB; NGR234_344
 
     0.486
NGR_a02060
Putative transposase y4pF/y4sB; y4pF; NGR234_295; Belongs to the transposase 20 family
 
     0.486
NGR_c17700
annotation not available
       0.471
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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