STRINGSTRING
NGR_c20080 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_c20080" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_c20080annotation not available (182 aa)    
Predicted Functional Partners:
NGR_c20090
Predicted transmembrane transcriptional regulator; Anti-sigma factor (270 aa)
 
 
 
  0.946
NGR_c20070
annotation not available (124 aa)
 
     
  0.893
NGR_c00760
annotation not available (239 aa)
 
 
 
  0.603
NGR_c35180
annotation not available (783 aa)
     
 
  0.547
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1401 aa)
   
 
  0.541
NGR_c35170
annotation not available (349 aa)
       
 
  0.530
NGR_c23450
annotation not available (275 aa)
 
 
 
  0.510
NGR_c16510
annotation not available (331 aa)
     
      0.499
NGR_c36130
annotation not available (350 aa)
       
      0.497
flgJ
annotation not available (340 aa)
       
      0.497
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
Server load: low (15%) [HD]