NGR_c20410 protein (Sinorhizobium fredii NGR234)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

NGR_c20410

annotation not available (678 aa)

Predicted Functional Partners:

NGR_c20400

0.923

NGR_c20420

0.852

NGR_c20440

0.849

NGR_c20430

0.841

lcdH

0.784

trxB3

0.782

NGR_c20390

0.745

NGR_c04860

0.744

NGR_c26320

0.730

NGR_c26080

0.727

Your Current Organism:

Sinorhizobium fredii NGR234

NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NGR_c04860	NGR_c20410	NGR_c04860	NGR_c20410	annotation not available	annotation not available	0.744
NGR_c20390	NGR_c20400	NGR_c20390	NGR_c20400	Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline	annotation not available	0.907
NGR_c20390	NGR_c20410	NGR_c20390	NGR_c20410	Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline	annotation not available	0.745
NGR_c20390	NGR_c20420	NGR_c20390	NGR_c20420	Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline	annotation not available	0.814
NGR_c20390	NGR_c20430	NGR_c20390	NGR_c20430	Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline	annotation not available	0.453
NGR_c20390	NGR_c20440	NGR_c20390	NGR_c20440	Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline	annotation not available	0.417
NGR_c20400	NGR_c20390	NGR_c20400	NGR_c20390	annotation not available	Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline	0.907
NGR_c20400	NGR_c20410	NGR_c20400	NGR_c20410	annotation not available	annotation not available	0.923
NGR_c20400	NGR_c20420	NGR_c20400	NGR_c20420	annotation not available	annotation not available	0.692
NGR_c20400	NGR_c20430	NGR_c20400	NGR_c20430	annotation not available	annotation not available	0.466
NGR_c20400	NGR_c20440	NGR_c20400	NGR_c20440	annotation not available	annotation not available	0.429
NGR_c20410	NGR_c04860	NGR_c20410	NGR_c04860	annotation not available	annotation not available	0.744
NGR_c20410	NGR_c20390	NGR_c20410	NGR_c20390	annotation not available	Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline	0.745
NGR_c20410	NGR_c20400	NGR_c20410	NGR_c20400	annotation not available	annotation not available	0.923
NGR_c20410	NGR_c20420	NGR_c20410	NGR_c20420	annotation not available	annotation not available	0.852
NGR_c20410	NGR_c20430	NGR_c20410	NGR_c20430	annotation not available	annotation not available	0.841
NGR_c20410	NGR_c20440	NGR_c20410	NGR_c20440	annotation not available	annotation not available	0.849
NGR_c20410	NGR_c26080	NGR_c20410	NGR_c26080	annotation not available	annotation not available	0.727
NGR_c20410	NGR_c26320	NGR_c20410	NGR_c26320	annotation not available	annotation not available	0.730
NGR_c20410	lcdH	NGR_c20410	NGR_c21580	annotation not available	L-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine	0.784

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