STRINGSTRING
NGR_c23170 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_c23170" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_c23170annotation not available (318 aa)    
Predicted Functional Partners:
NGR_c00280
annotation not available (755 aa)
     
 
  0.706
NGR_c18020
annotation not available (236 aa)
         
  0.687
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of the nitrogen fixation genes (nif operon), glnA and dctA for dicarboxylate transport. The open complex (sigma-54 and core RNA polymerase) serves as the receptor for receipt of the melting signal from the remotely bound activator proteins NifA, NtrC, or DctD for the expression of the regulated proteins (519 aa)
         
  0.685
NGR_c34460
annotation not available (917 aa)
         
  0.682
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1040 aa)
         
  0.678
NGR_c30300
annotation not available (415 aa)
     
 
  0.672
nifA
Nif-specific regulatory protein; Required for activation of most nif operons, which are directly involved in nitrogen fixation (594 aa)
 
   
 
  0.660
NGR_c01850
annotation not available (1168 aa)
         
  0.648
cheA2
annotation not available (764 aa)
   
   
  0.635
NGR_c07040
annotation not available (598 aa)
   
 
  0.633
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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