STRINGSTRING
suhB protein (Sinorhizobium fredii NGR234) - STRING interaction network
"suhB" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
suhBannotation not available (266 aa)    
Predicted Functional Partners:
idhA2
annotation not available (330 aa)
       
  0.901
iolG
Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2- keto-myo-inositol (2KMI or 2-inosose) (340 aa)
       
    0.900
NGR_c04230
annotation not available (272 aa)
   
   
 
0.853
NGR_a03700
Uncharacterized protein y4fL; y4fL; NGR234_109 (275 aa)
   
   
 
0.852
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho’s RNA-dependent ATPase activity, and release of the mRNA from the DNA template (421 aa)
   
   
  0.729
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family (344 aa)
     
   
  0.674
speF
annotation not available (377 aa)
     
   
  0.669
NGR_c28210
annotation not available (343 aa)
         
  0.557
NGR_c28220
annotation not available (368 aa)
              0.548
NGR_c28240
annotation not available (378 aa)
              0.547
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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