STRINGSTRING
NGR_c30060 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_c30060" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_c30060annotation not available (776 aa)    
Predicted Functional Partners:
NGR_c30070
Putative secretion protein Type I; HlyD family (445 aa)
   
  0.988
NGR_c30050
annotation not available (667 aa)
 
          0.956
NGR_c30040
annotation not available (565 aa)
 
          0.835
NGR_c30030
annotation not available (175 aa)
 
          0.772
NGR_c30080
TPR repeat-containing protein; Similar to cellulose biosynthesis protein (414 aa)
 
          0.633
tolC
annotation not available (456 aa)
   
   
  0.609
NGR_c03650
annotation not available (985 aa)
 
   
  0.478
NGR_c23240
Uncharacterized protein; Similar to hemolysin-type calcium-binding repeat (1049 aa)
 
   
  0.476
NGR_c27300
annotation not available (607 aa)
 
   
  0.470
NGR_c19330
annotation not available (976 aa)
 
   
  0.467
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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