STRINGSTRING
xerC protein (Sinorhizobium fredii NGR234) - STRING interaction network
"xerC" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCannotation not available (310 aa)    
Predicted Functional Partners:
NGR_a03610
Putative integrase/recombinase y4gC; y4gC; NGR234_118; Belongs to the ’phage’ integrase family (192 aa)
   
          0.771
NGR_a01820
Putative integrase/recombinase y4rE; y4rE; NGR234_328; Belongs to the ’phage’ integrase family (310 aa)
   
  0.769
NGR_a01830
Putative integrase/recombinase y4rD; Seems to be non-functional (281 aa)
 
   
  0.744
NGR_a01850
Putative integrase/recombinase y4rB; y4rB; NGR234_325; Belongs to the ’phage’ integrase family (314 aa)
   
  0.697
NGR_c31180
annotation not available (304 aa)
              0.602
dank
RNA polymerase-binding transcription factor DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters (139 aa)
   
   
  0.571
purC
annotation not available (254 aa)
         
  0.544
rpmE
50S ribosomal protein L31; Binds the 23S rRNA (73 aa)
           
  0.495
NGR_c31200
annotation not available (358 aa)
              0.480
ruvB
Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing (349 aa)
 
   
  0.435
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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