STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0275PFAM: S-layer domain protein; KEGG: drm:Dred_2357 S-layer domain-containing protein. (830 aa)    
Predicted Functional Partners:
Ccel_0274
PFAM: S-layer domain protein; Fibronectin type III domain protein; KEGG: cth:Cthe_2454 fibronectin, type III.
 
     0.918
Ccel_0278
PFAM: S-layer domain protein; KEGG: cth:Cthe_2613 S-layer-like domain-containing protein.
 
   
 0.789
Ccel_1519
KEGG: predicted protein.
  
 
   0.786
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
 
   0.784
Ccel_1515
Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein.
  
 
   0.783
Ccel_1338
PFAM: Peptidoglycan-binding LysM; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0635 protein serine/threonine phosphatases.
 
 
   0.780
Ccel_1376
PFAM: S-layer domain protein; copper amine oxidase domain protein; KEGG: lsp:Bsph_1041 putative S-layer protein/N-acetylmuramoyl-L-alanine amidase.
  
   
 0.767
Ccel_1937
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0243 copper amine oxidase-like protein.
  
    0.765
Ccel_3397
PFAM: S-layer domain protein; KEGG: cth:Cthe_2348 Ig-related protein.
  
   
 0.762
Ccel_0509
KEGG: cth:Cthe_1830 hypothetical protein.
  
 
 0.758
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.