STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0623KEGG: gur:Gura_0797 hypothetical protein. (614 aa)    
Predicted Functional Partners:
Ccel_0621
PFAM: protein of unknown function DUF1287; KEGG: chy:CHY_2180 hypothetical protein.
 
     0.572
Ccel_0622
TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: amt:Amet_3503 YbaK/EbsC protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.463
Ccel_1101
Spore coat protein CotH; PFAM: cellulosome protein dockerin type I; Spore coat protein CotH; KEGG: scl:sce0771 hypothetical protein.
  
     0.446
Ccel_2012
SMART: Parallel beta-helix repeat; KEGG: dol:Dole_0363 parallel beta-helix repeat-containing protein.
  
    0.440
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.