STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO53530.1Uncharacterised protein. (304 aa)    
Predicted Functional Partners:
CUP03354.1
Predicted membrane protein (DUF2154).
 
  
 0.787
fadR_2
Fatty acid metabolism regulator protein.
 
     0.682
CUO53446.1
Uncharacterized conserved protein.
 
     0.611
pspC
Phage shock protein C.
  
  
 0.526
kstR2_2
HTH-type transcriptional repressor KstR2.
       0.497
CUP30781.1
Predicted membrane protein.
 
 
  0.488
CUP02492.1
Uncharacterized protein conserved in bacteria.
    
   0.432
CUP06580.1
Uncharacterised protein.
    
   0.432
CUN80795.1
Predicted membrane protein.
  
 
  0.410
Your Current Organism:
Faecalicatena contorta
NCBI taxonomy Id: 39482
Other names: ATCC 25540, CCUG 52236, Catenabacterium contortum, DSM 3982, Eubacterium contortum, F. contorta, JCM 6483
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