STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araC_1Arabinose operon regulatory protein. (295 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.733
flgG_1
Distal rod protein.
    
   0.695
flgE
Flagellar hook protein flgE.
    
   0.695
adhE_2
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.566
rhaS
L-rhamnose operon regulatory protein rhaS.
 
 
0.525
oxyR
Morphology and auto-aggregation control protein; Belongs to the LysR transcriptional regulatory family.
  
  
 0.524
CUQ81323.1
Glycosyl hydrolase family 59.
  
    0.488
bga
Beta-galactosidase precursor.
  
    0.468
ypdC
Uncharacterized HTH-type transcriptional regulator ypdC.
 
 
0.468
btr_2
Bacillibactin transport regulator.
 
 
0.466
Your Current Organism:
Eubacterium siraeum
NCBI taxonomy Id: 39492
Other names: ATCC 29066, DSM 15702, DSM 3996, [. siraeum, [Eubacterium] siraeum
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