Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BAG42406.1 | nudH | BMULJ_00439 | BMULJ_00440 | Putative lipoprotein. | Putative (di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.781 |
| BAG47567.1 | nudH | BMULJ_05752 | BMULJ_00440 | Contains response regulator receiver domain. | Putative (di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.824 |
| dapF | nudH | BMULJ_00152 | BMULJ_00440 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | Putative (di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.968 |
| deaD | deaD-3 | BMULJ_02017 | BMULJ_02633 | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | 0.427 |
| deaD | nnrD | BMULJ_02017 | BMULJ_01885 | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. | Putative carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of [...] | 0.986 |
| deaD | nudH | BMULJ_02017 | BMULJ_00440 | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. | Putative (di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.774 |
| deaD | rnb | BMULJ_02017 | BMULJ_00464 | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. | COG0557: Exoribonuclease R, Ralstonia solanacearum; KEGG, K01147. | 0.448 |
| deaD | rnb-2 | BMULJ_02017 | BMULJ_01557 | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. | Exoribonuclease II; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.483 |
| deaD | rph | BMULJ_02017 | BMULJ_00833 | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.825 |
| deaD-2 | deaD-3 | BMULJ_02303 | BMULJ_02633 | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | 0.903 |
| deaD-2 | nnrD | BMULJ_02303 | BMULJ_01885 | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. | Putative carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of [...] | 0.986 |
| deaD-2 | nudH | BMULJ_02303 | BMULJ_00440 | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. | Putative (di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.774 |
| deaD-2 | rnb | BMULJ_02303 | BMULJ_00464 | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. | COG0557: Exoribonuclease R, Ralstonia solanacearum; KEGG, K01147. | 0.448 |
| deaD-2 | rnb-2 | BMULJ_02303 | BMULJ_01557 | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. | Exoribonuclease II; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.483 |
| deaD-2 | rph | BMULJ_02303 | BMULJ_00833 | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.825 |
| deaD-3 | deaD | BMULJ_02633 | BMULJ_02017 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. | 0.427 |
| deaD-3 | deaD-2 | BMULJ_02633 | BMULJ_02303 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | COG0513: Superfamily II DNA and RNA helicases, Ralstonia solanacearum; DeaD protein; KEGG, K05592; Belongs to the DEAD box helicase family. | 0.903 |
| deaD-3 | nnrD | BMULJ_02633 | BMULJ_01885 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | Putative carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of [...] | 0.986 |
| deaD-3 | nudH | BMULJ_02633 | BMULJ_00440 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | Putative (di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.774 |
| deaD-3 | rnb | BMULJ_02633 | BMULJ_00464 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | COG0557: Exoribonuclease R, Ralstonia solanacearum; KEGG, K01147. | 0.448 |
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