STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI53878.1PFAM: BioY protein; KEGG: ret:RHE_CH00928 biotin transporter protein. (187 aa)    
Predicted Functional Partners:
ACI53879.1
PFAM: cobalt transport protein; KEGG: ret:RHE_CH00929 biotin transporter, permease protein.
 
 0.999
ACI53880.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0001027 probable cobalt/biotin ABC transporter, ATP-binding protein.
 
 
 0.998
ACI54569.1
TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: ret:RHE_CH01619 biotin--[acetyl-CoA carboxylase] synthetase protein.
 
   
 0.651
cobB
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
  
  
 0.629
ACI55159.1
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: rec:RHECIAT_CH0002336 propionyl-CoA carboxylase protein, alpha subunit.
 
     0.447
ACI53881.1
PFAM: protein of unknown function DUF1006; KEGG: rec:RHECIAT_CH0001029 hypothetical protein.
       0.428
Your Current Organism:
Rhizobium leguminosarum
NCBI taxonomy Id: 395492
Other names: R. leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii str. WSM2304, Rhizobium leguminosarum bv. trifolii strain WSM2304
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