STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI56060.1PFAM: NUDIX hydrolase; KEGG: ret:RHE_CH03050 probable NTP pyrophosphohydrolase protein, MutT/NUDIX family. (216 aa)    
Predicted Functional Partners:
nnrE
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
  
 0.834
ACI56059.1
PFAM: Polynucleotide adenylyltransferase region; KEGG: rec:RHECIAT_CH0003209 poly(A) polymerase protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
   
 
 0.823
ACI56061.1
PFAM: protein of unknown function DUF1285; KEGG: rec:RHECIAT_CH0003211 hypothetical protein.
       0.800
ACI56062.1
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: rec:RHECIAT_CH0003212 putative methanol dehydrogenase regulator MoxR-like protein.
       0.576
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
   
 0.559
ACI56063.1
KEGG: rec:RHECIAT_CH0003213 hypothetical protein.
       0.559
ACI56064.1
TIGRFAM: conserved hypothetical membrane protein; KEGG: rec:RHECIAT_CH0003214 hypothetical protein.
       0.559
ACI56065.1
KEGG: rec:RHECIAT_CH0003215 hypothetical protein.
       0.559
ACI56066.1
PFAM: GCN5-related N-acetyltransferase; KEGG: rec:RHECIAT_CH0003216 putative acetyltransferase protein.
       0.504
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
    
 0.429
Your Current Organism:
Rhizobium leguminosarum
NCBI taxonomy Id: 395492
Other names: R. leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii WSM2304, Rhizobium leguminosarum bv. trifolii str. WSM2304, Rhizobium leguminosarum bv. trifolii strain WSM2304
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