STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_0785PFAM: protein of unknown function DUF6 transmembrane; KEGG: slt:Slit_0083 protein of unknown function DUF6 transmembrane. (305 aa)    
Predicted Functional Partners:
Galf_0786
Hypothetical protein.
       0.773
Galf_0783
PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: slt:Slit_0082 xylose isomerase domain protein TIM barrel.
 
     0.583
Galf_0784
KEGG: vei:Veis_4767 NlpA lipoprotein.
       0.562
Galf_2444
KEGG: slt:Slit_0711 hypothetical protein.
 
     0.559
Galf_1547
PFAM: porin LamB type; KEGG: slt:Slit_1664 porin LamB type.
  
     0.540
Galf_0219
PFAM: O-antigen polymerase; KEGG: slt:Slit_2615 O-antigen polymerase.
  
     0.493
Galf_0787
KEGG: sha:SH1849 hypothetical protein.
       0.493
Galf_1180
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: slt:Slit_1269 putative adenylate/guanylate cyclase.
  
     0.463
Galf_0201
PFAM: glycosyl transferase family 39; KEGG: slt:Slit_0317 glycosyl transferase family 39.
 
     0.461
Galf_0781
TIGRFAM: urea carboxylase; urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; biotin carboxylase domain protein; Carbamoyl-phosphate synthetase large chain domain protein; biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain ATP-binding; KEGG: slt:Slit_0080 UreA carboxylase; SMART: Allophanate hydrolase subunit 2; biotin carboxylase domain protein; Allophanate hydrolase subunit 1.
       0.430
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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