STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_1357PFAM: outer membrane efflux protein; KEGG: slt:Slit_1863 outer membrane efflux protein. (412 aa)    
Predicted Functional Partners:
Galf_1356
KEGG: slt:Slit_1864 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: Copper binding periplasmic protein CusF; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.976
Galf_1355
KEGG: dar:Daro_2265 heavy metal efflux pump CzcA; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.929
Galf_0702
KEGG: slt:Slit_1864 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: Copper binding periplasmic protein CusF; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.904
Galf_2715
KEGG: slt:Slit_1864 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: Copper binding periplasmic protein CusF.
 
 
 0.904
Galf_1434
KEGG: app:CAP2UW1_1494 type I secretion membrane fusion protein, HlyD family; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein.
  
 
 0.714
Galf_0703
KEGG: ajs:Ajs_2703 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.708
Galf_2716
KEGG: ajs:Ajs_2703 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein.
 
  
 0.708
Galf_0928
KEGG: tbd:Tbd_1328 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.616
Galf_1695
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rpf:Rpic12D_3606 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.613
Galf_1164
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: slt:Slit_1970 efflux transporter, RND family, MFP subunit.
 
   0.598
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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