STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_1434KEGG: app:CAP2UW1_1494 type I secretion membrane fusion protein, HlyD family; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein. (474 aa)    
Predicted Functional Partners:
Galf_1436
KEGG: gur:Gura_2547 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
 0.993
Galf_1435
KEGG: slt:Slit_2913 type I secretion outer membrane protein, TolC family; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein.
 
 
 0.942
Galf_1437
PFAM: Hemolysin-type calcium-binding region; KEGG: nmi:NMO_1247 FrpA/C-related protein.
 
  
 0.857
Galf_1161
PFAM: outer membrane efflux protein; KEGG: slt:Slit_1973 outer membrane efflux protein.
 
 
 0.815
Galf_1759
Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
 
 
 0.799
Galf_2484
KEGG: slt:Slit_2913 type I secretion outer membrane protein, TolC family; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein.
 
 
 0.766
Galf_2852
KEGG: slt:Slit_2913 type I secretion outer membrane protein, TolC family; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein.
 
 
 0.766
Galf_1442
TIGRFAM: outer membrane adhesin like proteiin; PFAM: Ig family protein; Hemolysin-type calcium-binding region; KEGG: ppd:Ppro_2370 Ig family protein; SMART: Dystroglycan-type cadherin domain protein.
 
  
 0.724
Galf_0701
PFAM: outer membrane efflux protein; KEGG: slt:Slit_1863 outer membrane efflux protein.
  
 
 0.714
Galf_0927
PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1329 cobalt-zinc-cadmium outer membrane resistance protein.
  
 
 0.714
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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