STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Galf_2726PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rfr:Rfer_0419 hypothetical protein. (214 aa)    
Predicted Functional Partners:
Galf_2725
PFAM: Protein of unknown function DUF2933; KEGG: bvi:Bcep1808_7279 hypothetical protein.
 
    0.948
Galf_2727
PFAM: YHS domain-containing protein; KEGG: sde:Sde_1941 hypothetical protein.
 
     0.799
Galf_0712
PFAM: Protein of unknown function DUF2933; KEGG: bvi:Bcep1808_7279 hypothetical protein.
 
    0.783
Galf_2722
KEGG: mta:Moth_1992 hypothetical protein.
 
     0.690
Galf_2724
TIGRFAM: copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; YHS domain-containing protein; Haloacid dehalogenase domain protein hydrolase; KEGG: slt:Slit_1868 copper-translocating P-type ATPase; SMART: TRASH domain-containing protein.
      0.689
Galf_2723
KEGG: pol:Bpro_1181 hypothetical protein.
       0.540
Your Current Organism:
Gallionella capsiferriformans
NCBI taxonomy Id: 395494
Other names: G. capsiferriformans ES-2, Gallionella capsiferriformans ES-2, Gallionella capsiferriformans str. ES-2, Gallionella capsiferriformans strain ES-2, Gallionella ferruginea ES-2, Gallionella ferruginea subsp. capsiferriformans ES-2
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