STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0078TIGRFAM: malonate decarboxylase acyl carrier protein; PFAM: malonate decarboxylase delta subunit; KEGG: dac:Daci_1767 malonate decarboxylase acyl carrier protein. (112 aa)    
Predicted Functional Partners:
mdcB
triphosphoribosyl-dephospho-CoA synthase MdcB; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
  
 0.984
Lcho_0079
TIGRFAM: malonate decarboxylase, alpha subunit; KEGG: mpt:Mpe_A2895 alpha subunit of malonate decarboxylase.
 
  
 0.979
Lcho_0077
TIGRFAM: malonate decarboxylase, beta subunit; KEGG: dac:Daci_1766 malonate decarboxylase, beta subunit.
 
  
 0.972
Lcho_0076
TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: dac:Daci_1765 malonate decarboxylase, gamma subunit.
 
     0.954
Lcho_0075
KEGG: dac:Daci_1764 holo-ACP synthase, malonate decarboxylase-specific.
 
     0.953
Lcho_0073
PFAM: Acyl transferase; KEGG: dac:Daci_1762 (acyl-carrier protein) S-malonyltransferase.
 
  
 0.859
Lcho_2417
PFAM: HpcH/HpaI aldolase; KEGG: pna:Pnap_3810 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.849
Lcho_2709
KEGG: mpt:Mpe_A2173 putative lyase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.849
Lcho_3221
PFAM: FAD dependent oxidoreductase; KEGG: mpt:Mpe_A3664 glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
   
    0.805
Lcho_0080
PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A2898 hypothetical protein.
       0.762
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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