STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0776PFAM: integrase family protein; KEGG: eba:p2A219 putative integrase. (333 aa)    
Predicted Functional Partners:
Lcho_0777
PFAM: integrase family protein; KEGG: eba:ebA499 phage-related integrase.
     0.950
Lcho_0775
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: mlo:mlr9324 integrase/recombinase; Belongs to the 'phage' integrase family.
 
     0.946
Lcho_0770
PFAM: integrase family protein; KEGG: eba:ebA499 phage-related integrase; Belongs to the 'phage' integrase family.
 
     0.798
Lcho_0768
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: eba:ebA495 phage-related integrase; Belongs to the 'phage' integrase family.
  
     0.774
xerC
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
 
 
 0.652
Lcho_2929
TIGRFAM: general secretion pathway protein H; KEGG: mpt:Mpe_A2940 fimbrial biogenesis protein.
  
     0.595
Lcho_0778
PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_4705 hypothetical protein.
       0.519
Lcho_0779
PFAM: Integrase catalytic region; KEGG: pol:Bpro_4706 integrase, catalytic region.
       0.519
Lcho_1038
PFAM: Integrase catalytic region; KEGG: bvi:Bcep1808_6227 integrase, catalytic region.
  
     0.441
Lcho_0490
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: neu:NE0383 hypothetical protein.
 
     0.427
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.