STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_0922PFAM: protein of unknown function DUF6 transmembrane; KEGG: mpt:Mpe_A3564 putative transmembrane protein. (309 aa)    
Predicted Functional Partners:
Lcho_0921
PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A3563 hypothetical protein.
       0.778
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.512
Lcho_0919
PFAM: Class I peptide chain release factor; KEGG: ajs:Ajs_1612 class I peptide chain release factor.
       0.462
Lcho_4232
KEGG: bra:BRADO3400 conserved hypothetical protein; putative signal peptide.
  
     0.421
Lcho_0147
KEGG: ajs:Ajs_1464 hypothetical protein.
  
     0.407
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.