STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3209TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3474 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine. (216 aa)    
Predicted Functional Partners:
Lcho_3208
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3475 ABC transporter related.
 0.998
Lcho_1148
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: pna:Pnap_3442 extracellular solute-binding protein, family 3.
 
 0.981
Lcho_3210
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3473 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
 
  
 
0.965
Lcho_3211
PFAM: extracellular solute-binding protein family 3; KEGG: pol:Bpro_3472 extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 0.952
Lcho_2139
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2327 ABC transporter related.
 
 0.912
Lcho_2685
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0446 putative polar amino acid transport system ATP-binding protein.
 
 0.910
Lcho_4021
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0446 putative polar amino acid transport system ATP-binding protein.
 
 0.910
Lcho_2137
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2325 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
 
0.700
Lcho_4024
PFAM: extracellular solute-binding protein family 3; KEGG: aav:Aave_4073 extracellular solute-binding protein, family 3.
 
 
 0.691
Lcho_2688
PFAM: extracellular solute-binding protein family 3; KEGG: vei:Veis_1219 extracellular solute-binding protein, family 3.
 
 
 0.649
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.