STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2080PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: acr:Acry_2399 NAD-dependent epimerase/dehydratase. (328 aa)    
Predicted Functional Partners:
Bind_2079
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: smd:Smed_4324 GntR domain protein.
 
     0.582
Bind_0876
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azc:AZC_4173 short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    0.574
Bind_0846
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.557
Bind_2087
PFAM: type III effector Hrp-dependent outers; KEGG: bja:blr2930 hypothetical protein.
 
    0.557
Bind_3069
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bja:blr6437 gluconolactonase precursor.
  
     0.554
Bind_1113
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: mex:Mext_1947 beta-ketoacyl synthase.
  
 
 0.516
Bind_2081
PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_4374 major facilitator family transporter.
  
    0.494
Bind_2875
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: azc:AZC_3752 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
 
   0.493
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 0.477
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.475
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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