STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2192TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: rpa:RPA2669 hypothetical protein. (109 aa)    
Predicted Functional Partners:
Bind_0827
KEGG: bja:bll0464 hypothetical protein.
 
     0.673
Bind_3041
PFAM: NLP/P60 protein; KEGG: mex:Mext_0858 NLP/P60 protein.
  
     0.569
Bind_0667
PFAM: conserved hypothetical protein; KEGG: mex:Mext_1983 hypothetical protein; Belongs to the UPF0262 family.
  
     0.546
Bind_0660
PFAM: ribonuclease T2; KEGG: mex:Mext_0919 ribonuclease T2; Belongs to the RNase T2 family.
  
     0.497
nnrE
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
       0.495
Bind_1079
PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr7760 hypothetical protein.
  
     0.419
Bind_3123
PFAM: protein of unknown function DUF1476; KEGG: pla:Plav_2590 protein of unknown function DUF1476.
  
     0.403
Bind_3415
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mex:Mext_2677 mandelate racemase/muconate lactonizing protein.
  
     0.402
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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