STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2380PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bra:BRADO4157 putative TonB dependent receptor. (782 aa)    
Predicted Functional Partners:
Bind_2854
TIGRFAM: TonB family protein; KEGG: rru:Rru_A2153 TonB-like.
 
 
 0.667
Bind_0529
TIGRFAM: TonB family protein; KEGG: pfo:Pfl_3737 TonB-like.
 
 
 0.528
Bind_1846
PFAM: TonB-dependent receptor; KEGG: pfl:PFL_0213 TonB dependent receptor, putative.
  
     0.518
Bind_1817
KEGG: cph:Cpha266_2437 hypothetical protein.
  
     0.508
Bind_2554
PFAM: TonB-dependent receptor; KEGG: pfl:PFL_0213 TonB dependent receptor, putative.
  
     0.507
Bind_3060
PFAM: surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: nha:Nham_0727 hemolysin activation/secretion protein-like.
  
     0.503
Bind_2381
KEGG: rpb:RPB_3553 hypothetical protein.
       0.492
Bind_0549
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nar:Saro_1708 TonB-dependent receptor.
  
     0.476
Bind_3617
Phospholipase C, phosphocholine-specific; KEGG: rfr:Rfer_3735 twin-arginine translocation pathway signal; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756.
  
     0.470
Bind_2937
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: rpd:RPD_4002 TonB-like.
 
 
 0.466
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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