Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Msil_0548 | Msil_0886 | PFAM: ETC complex I subunit conserved region; KEGG: bid:Bind_1550 ETC complex I subunit conserved region. | PFAM: O-methyltransferase family 3; KEGG: rpe:RPE_4704 O-methyltransferase, family 3. | 0.582 |
Msil_0885 | Msil_0886 | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rpt:Rpal_3674 transcriptional regulator, AraC family. | PFAM: O-methyltransferase family 3; KEGG: rpe:RPE_4704 O-methyltransferase, family 3. | 0.648 |
Msil_0886 | Msil_0548 | PFAM: O-methyltransferase family 3; KEGG: rpe:RPE_4704 O-methyltransferase, family 3. | PFAM: ETC complex I subunit conserved region; KEGG: bid:Bind_1550 ETC complex I subunit conserved region. | 0.582 |
Msil_0886 | Msil_0885 | PFAM: O-methyltransferase family 3; KEGG: rpe:RPE_4704 O-methyltransferase, family 3. | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rpt:Rpal_3674 transcriptional regulator, AraC family. | 0.648 |
Msil_0886 | Msil_0887 | PFAM: O-methyltransferase family 3; KEGG: rpe:RPE_4704 O-methyltransferase, family 3. | Hypothetical protein. | 0.424 |
Msil_0886 | Msil_1247 | PFAM: O-methyltransferase family 3; KEGG: rpe:RPE_4704 O-methyltransferase, family 3. | TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_0846 amino acid adenylation domain protein. | 0.469 |
Msil_0886 | Msil_2723 | PFAM: O-methyltransferase family 3; KEGG: rpe:RPE_4704 O-methyltransferase, family 3. | Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Methyltransferase type 12; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_1113 beta-ketoacyl synthase. | 0.548 |
Msil_0887 | Msil_0886 | Hypothetical protein. | PFAM: O-methyltransferase family 3; KEGG: rpe:RPE_4704 O-methyltransferase, family 3. | 0.424 |
Msil_1247 | Msil_0886 | TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_0846 amino acid adenylation domain protein. | PFAM: O-methyltransferase family 3; KEGG: rpe:RPE_4704 O-methyltransferase, family 3. | 0.469 |
Msil_1247 | Msil_2723 | TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_0846 amino acid adenylation domain protein. | Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Methyltransferase type 12; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_1113 beta-ketoacyl synthase. | 0.991 |
Msil_2723 | Msil_0886 | Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Methyltransferase type 12; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_1113 beta-ketoacyl synthase. | PFAM: O-methyltransferase family 3; KEGG: rpe:RPE_4704 O-methyltransferase, family 3. | 0.548 |
Msil_2723 | Msil_1247 | Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Methyltransferase type 12; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_1113 beta-ketoacyl synthase. | TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_0846 amino acid adenylation domain protein. | 0.991 |