STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msil_1039PFAM: plasmid stabilization system; KEGG: bid:Bind_2414 plasmid stabilization system. (83 aa)    
Predicted Functional Partners:
Msil_1040
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bid:Bind_2413 helix-turn-helix domain protein.
     
 0.792
Msil_2546
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mpo:Mpop_4312 transcriptional regulator, XRE family.
  
 
 0.788
Msil_1401
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.705
Msil_3569
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.705
Msil_1032
KEGG: bja:blr7315 hypothetical protein.
       0.580
Msil_1033
KEGG: bja:bsr7316 hypothetical protein.
       0.580
Msil_1034
KEGG: bja:bsr7317 putative monovalent cation/H+ antiporter subunit G.
       0.580
Msil_1035
KEGG: bja:blr7318 hypothetical protein.
       0.580
Msil_1036
PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: bja:blr7319 hypothetical protein.
       0.580
Msil_1037
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: bja:blr7320 hypothetical protein.
       0.580
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.