node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Msil_0260 | Msil_1732 | Msil_0260 | Msil_1732 | KEGG: bid:Bind_1072 putative mRNA 3-end processing factor. | KEGG: nha:Nham_3998 putative DNA topoisomerase I. | 0.442 |
Msil_0260 | Msil_1736 | Msil_0260 | Msil_1736 | KEGG: bid:Bind_1072 putative mRNA 3-end processing factor. | TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: xau:Xaut_4365 ATP-dependent DNA ligase. | 0.735 |
Msil_0260 | Msil_3053 | Msil_0260 | Msil_3053 | KEGG: bid:Bind_1072 putative mRNA 3-end processing factor. | KEGG: bid:Bind_0643 hypothetical protein. | 0.650 |
Msil_0260 | Msil_3103 | Msil_0260 | Msil_3103 | KEGG: bid:Bind_1072 putative mRNA 3-end processing factor. | TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; KEGG: smd:Smed_1305 DNA polymerase LigD ligase region. | 0.767 |
Msil_0260 | polA | Msil_0260 | Msil_1391 | KEGG: bid:Bind_1072 putative mRNA 3-end processing factor. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.832 |
Msil_0542 | Msil_1736 | Msil_0542 | Msil_1736 | SMART: AAA ATPase; KEGG: bid:Bind_1535 putative DNA polymerase III delta prime subunit. | TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: xau:Xaut_4365 ATP-dependent DNA ligase. | 0.728 |
Msil_0542 | Msil_3053 | Msil_0542 | Msil_3053 | SMART: AAA ATPase; KEGG: bid:Bind_1535 putative DNA polymerase III delta prime subunit. | KEGG: bid:Bind_0643 hypothetical protein. | 0.670 |
Msil_0542 | Msil_3103 | Msil_0542 | Msil_3103 | SMART: AAA ATPase; KEGG: bid:Bind_1535 putative DNA polymerase III delta prime subunit. | TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; KEGG: smd:Smed_1305 DNA polymerase LigD ligase region. | 0.728 |
Msil_0542 | Msil_3705 | Msil_0542 | Msil_3705 | SMART: AAA ATPase; KEGG: bid:Bind_1535 putative DNA polymerase III delta prime subunit. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.998 |
Msil_0542 | polA | Msil_0542 | Msil_1391 | SMART: AAA ATPase; KEGG: bid:Bind_1535 putative DNA polymerase III delta prime subunit. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.928 |
Msil_1684 | Msil_1736 | Msil_1684 | Msil_1736 | PFAM: protein of unknown function DUF72; KEGG: cti:RALTA_A0022 conserved hypothetical protein, DUF72; putative exported protein. | TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: xau:Xaut_4365 ATP-dependent DNA ligase. | 0.763 |
Msil_1684 | Msil_3103 | Msil_1684 | Msil_3103 | PFAM: protein of unknown function DUF72; KEGG: cti:RALTA_A0022 conserved hypothetical protein, DUF72; putative exported protein. | TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; KEGG: smd:Smed_1305 DNA polymerase LigD ligase region. | 0.614 |
Msil_1684 | ku | Msil_1684 | Msil_1734 | PFAM: protein of unknown function DUF72; KEGG: cti:RALTA_A0022 conserved hypothetical protein, DUF72; putative exported protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.536 |
Msil_1684 | ku-2 | Msil_1684 | Msil_1735 | PFAM: protein of unknown function DUF72; KEGG: cti:RALTA_A0022 conserved hypothetical protein, DUF72; putative exported protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.546 |
Msil_1732 | Msil_0260 | Msil_1732 | Msil_0260 | KEGG: nha:Nham_3998 putative DNA topoisomerase I. | KEGG: bid:Bind_1072 putative mRNA 3-end processing factor. | 0.442 |
Msil_1732 | Msil_1736 | Msil_1732 | Msil_1736 | KEGG: nha:Nham_3998 putative DNA topoisomerase I. | TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: xau:Xaut_4365 ATP-dependent DNA ligase. | 0.758 |
Msil_1732 | Msil_3103 | Msil_1732 | Msil_3103 | KEGG: nha:Nham_3998 putative DNA topoisomerase I. | TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; KEGG: smd:Smed_1305 DNA polymerase LigD ligase region. | 0.722 |
Msil_1732 | ku | Msil_1732 | Msil_1734 | KEGG: nha:Nham_3998 putative DNA topoisomerase I. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.783 |
Msil_1732 | ku-2 | Msil_1732 | Msil_1735 | KEGG: nha:Nham_3998 putative DNA topoisomerase I. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.579 |
Msil_1732 | polA | Msil_1732 | Msil_1391 | KEGG: nha:Nham_3998 putative DNA topoisomerase I. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.464 |