STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msil_2875KEGG: cak:Caul_4996 hypothetical protein. (153 aa)    
Predicted Functional Partners:
Msil_2876
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cak:Caul_4997 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
     0.924
Msil_2873
TIGRFAM: methyltransferase; PFAM: putative RNA methylase; Protein of unknown function methylase putative; KEGG: met:M446_6054 methyltransferase.
       0.496
Msil_2874
PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: mex:Mext_3861 RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family.
       0.496
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.