STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tgr7_3202KEGG: nwi:Nwi_1986 ribulose bisphosphate carboxylase, small chain. (110 aa)    
Predicted Functional Partners:
cbbL
Ribulose-bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
 0.999
Tgr7_3201
KEGG: nha:Nham_4334 carboxysome shell protein CsoS2.
 
   
 0.981
Tgr7_3240
PFAM: phosphoribulokinase/uridine kinase; KEGG: tbd:Tbd_2447 phosphoribulokinase.
 
 
 0.980
Tgr7_3195
KEGG: nwi:Nwi_1980 carboxysome structural peptide CsoS1B.
   
 
 0.957
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.920
pgk
KEGG: aeh:Mlg_2842 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.916
Tgr7_1355
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: noc:Noc_0178 HAD family hydrolase.
    
 0.909
Tgr7_3189
KEGG: afe:Lferr_1375 von Willebrand factor type A.
 
   
 0.778
Tgr7_1033
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: noc:Noc_0880 HAD family hydrolase.
 
   
 0.770
Tgr7_0126
KEGG: hha:Hhal_2395 transferase hexapeptide repeat containing protein.
    
 
 0.758
Your Current Organism:
Thioalkalivibrio sulfidiphilus
NCBI taxonomy Id: 396588
Other names: T. sulfidiphilus HL-EbGr7, Thioalkalivibrio sp. HL-EbGR7, Thioalkalivibrio sulfidiphilus HL-EbGr7, Thioalkalivibrio sulfidiphilus str. HL-EbGr7, Thioalkalivibrio sulfidiphilus strain HL-EbGr7, Thioalkalivibrio sulfidophilus HL-EbGr7
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