STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000720335_00413Unannotated protein. (231 aa)    
Predicted Functional Partners:
GCA_000720335_00260
Unannotated protein.
  
 
 0.916
GCA_000720335_00414
Unannotated protein.
    
  0.903
GCA_000720335_02678
Unannotated protein.
  
 
  0.837
GCA_000720335_03310
Unannotated protein.
    
  0.789
GCA_000720335_03669
Unannotated protein.
  
 
  0.781
GCA_000720335_00412
Unannotated protein.
       0.773
GCA_000720335_01265
Unannotated protein.
  
 
  0.757
GCA_000720335_00409
Unannotated protein.
       0.705
GCA_000720335_00410
Unannotated protein.
       0.705
GCA_000720335_00411
Unannotated protein.
       0.705
Your Current Organism:
Marmoricola aequoreus
NCBI taxonomy Id: 397278
Other names: JCM 13812, M. aequoreus, Marmoricola aequoreus Lee 2007, NRRL B-24464, strain SST-45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.