STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_0149PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bcn:Bcen_4217 major facilitator superfamily MFS_1. (441 aa)    
Predicted Functional Partners:
Aave_0150
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rme:Rmet_4320 transcriptional regulator, AraC family.
       0.752
Aave_0148
TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase, N-terminal domain; KEGG: rso:RSc1085 putative gst-related protein.
       0.526
Aave_4723
L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
   
 0.519
Aave_0147
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bur:Bcep18194_B1888 fumarylacetoacetate (FAA) hydrolase.
       0.500
Aave_3938
PFAM: Muconolactone delta-isomerase; KEGG: rme:Rmet_4677 muconolactone delta-isomerase.
 
   
 0.477
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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