STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_0676KEGG: bfs:BF1102 conserved hypothetical protein with RecF/RecN/SMC N-terminal domain. (712 aa)    
Predicted Functional Partners:
Aave_0675
PFAM: UvrD/REP helicase; KEGG: bfs:BF1103 putative ATP-dependent DNA helicase.
 
   
 0.941
Aave_3358
PFAM: restriction modification system DNA specificity domain; KEGG: fra:Francci3_4012 restriction modification system DNA specificity domain.
 
  
 0.753
Aave_3355
PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; KEGG: tbd:Tbd_2685 DEAD/DEAH box helicase.
 
    0.742
Aave_3359
PFAM: N-6 DNA methylase; KEGG: tbd:Tbd_2680 type I restriction-modification system methyltransferase subunit.
 
  
 0.686
Aave_0004
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: pca:Pcar_2730 putative transcriptional regulator.
  
    0.593
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
Server load: low (28%) [HD]