STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_0688Plasmid segregation centromere-binding protein ParG; KEGG: rso:RSc2604 hypothetical/unknown protein. (94 aa)    
Predicted Functional Partners:
Aave_0689
KEGG: rso:RSc2603 hypothetical/unknown protein.
 
     0.951
Aave_0690
Conjugation peptidase TraF; KEGG: rso:RSc2602 probable conjugal transfer TRAF transmembrane protein; Serine peptidase; MEROPS family S26C.
 
     0.951
Aave_0687
Plasmid segregation oscillating ATPase ParF; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rme:Rmet_1486 cobyrinic acid a,c-diamide synthase.
 
     0.948
Aave_0686
KEGG: rso:RSc2606 hypothetical replication initiator and transcription repressor protein.
 
     0.873
Aave_0685
KEGG: rso:RSc2607 hypothetical protein.
 
     0.865
Aave_0684
KEGG: rso:RSc2608 hypothetical/unknown protein.
 
     0.844
Aave_0683
KEGG: rso:RSc2609 probable lipoprotein.
 
     0.812
Aave_0691
KEGG: rso:RSc2601 hypothetical/unknown protein.
 
     0.793
Aave_0725
PFAM: CopG domain protein DNA-binding domain protein; KEGG: rme:Rmet_1549 CopG-like DNA-binding.
 
     0.781
Aave_0736
KEGG: rso:RSc2574 hypothetical/unknown protein.
  
     0.772
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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