STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_0713PFAM: NAD(P)H dehydrogenase (quinone); KEGG: mes:Meso_3301 NAD(P)H dehydrogenase (quinone). (201 aa)    
Predicted Functional Partners:
Aave_3916
Kef-type potassium/proton antiporter, CPA2 family; TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pol:Bpro_1237 potassium efflux system protein; TC 2.A.37.1; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.850
Aave_4786
Kef-type potassium/proton antiporter, CPA2 family; TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: pol:Bpro_4900 potassium efflux system protein; TC 2.A.37.1; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.850
Aave_0715
PFAM: aldo/keto reductase; KEGG: sme:SMc01429 putative oxidoreductase protein.
  
  
 0.633
Aave_0714
PFAM: GCN5-related N-acetyltransferase; KEGG: wsu:WS0665 hypothetical protein.
       0.596
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.461
Aave_3805
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bxe:Bxe_C0421 putative Orn/DAP/Arg decarboxylase.
    
  0.461
Aave_4632
KEGG: xcb:XC_1553 leucin rich protein.
  
     0.416
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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