STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_0732PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: rme:Rmet_1347 TrbL/VirB6 plasmid conjugal transfer protein. (463 aa)    
Predicted Functional Partners:
Aave_0730
KEGG: rso:RSc2580 probable conjugal transfer TrbJ signal peptide protein.
 
  
 0.995
Aave_0726
PFAM: type II secretion system protein E; KEGG: rso:RSc2584 probable conjugal transfer protein TrbB.
 
  
 0.994
Aave_0727
PFAM: Conjugal transfer protein TrbC; KEGG: rso:RSc2583 probable conjugal transfer trbC transmembrane protein.
 
  
 0.994
Aave_0728
KEGG: rme:Rmet_1552 putative conjugal transfer TrbD transmembrane protein.
 
  
 0.994
Aave_0729
SMART: AAA ATPase; KEGG: rme:Rmet_1553 ATPase.
 
  
 0.994
Aave_0733
PFAM: Conjugal transfer protein; KEGG: rme:Rmet_1348 conjugal transfer protein.
 
  
 0.993
Aave_0734
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rso:RSc2576 probable conjugal transfer lipoprotein TrbG.
 
  
 0.993
Aave_0735
PFAM: conjugation TrbI family protein; KEGG: rso:RSc2575 probable conjugal transfer trbi transmembrane protein.
 
  
 0.993
Aave_0724
PFAM: TRAG family protein; KEGG: rso:RSc2586 probable plasmid conjugation traG transmembrane protein.
 
   
 0.948
Aave_0725
PFAM: CopG domain protein DNA-binding domain protein; KEGG: rme:Rmet_1549 CopG-like DNA-binding.
 
     0.945
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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