STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Aave_3020PFAM: lipolytic enzyme, G-D-S-L family; KEGG: pol:Bpro_3031 arylesterase. (221 aa)    
Predicted Functional Partners:
Aave_3276
Hypothetical protein.
     
  0.900
Aave_3019
PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: rfr:Rfer_2425 ABC transporter-related protein.
 
     0.833
Aave_3824
PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_0944 protein of unknown function DUF214.
 
     0.791
Aave_2102
Cellulase; PFAM: glycoside hydrolase, family 5; cellulose-binding, family II; KEGG: xcb:XC_0639 cellulase.
  
 
 0.579
Aave_0897
Hypothetical protein; KEGG: rso:RSc2775 probable harpin-related protein.
  
 
 0.492
Aave_3072
KEGG: rfr:Rfer_3583 hypothetical protein.
  
 
 0.492
Aave_3538
KEGG: bcn:Bcen_4795 hypothetical protein.
  
 
 0.492
rlmB
23S rRNA Gm-2251 2'-O-methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA.
       0.470
Aave_3129
Hypothetical protein; KEGG: xcc:XCC2025 serine protease.
  
 
 0.459
cobB
PFAM: Silent information regulator protein Sir2; KEGG: rme:Rmet_2090 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
       0.449
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.