STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctaBProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (286 aa)    
Predicted Functional Partners:
Cmaq_1937
PFAM: cytochrome c oxidase subunit I; KEGG: nha:Nham_2711 cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
 0.999
Cmaq_1936
PFAM: cytochrome c oxidase subunit II; KEGG: neu:NE0684 possible cytochrome-c oxidase chain II.
 
 
 0.994
Cmaq_1900
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pai:PAE0596 metallo cofactor biosynthesis protein.
  
  
  0.911
Cmaq_1738
TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sai:Saci_2375 isocitrate dehydrogenase.
   
  
 0.641
folE
PFAM: GTP cyclohydrolase I; KEGG: hbu:Hbut_0868 GTP cyclohydrolase I.
       0.620
Cmaq_1912
PFAM: Cytochrome b/b6 domain; KEGG: sto:ST1667 hypothetical cytochrome b.
 
  
 0.592
Cmaq_1355
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pis:Pisl_0670 succinate dehydrogenase and fumarate reductase iron-sulfur protein.
 
  
 0.590
Cmaq_1939
PFAM: Cytochrome b/b6 domain; KEGG: sto:ST1667 hypothetical cytochrome b.
 
  
 0.566
Cmaq_1282
PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: afu:AF1824 F420H2:quinone oxidoreductase, 11.2 kDa subunit, putative.
   
  
 0.564
Cmaq_0427
TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: afu:AF1829 F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative.
   
  
 0.563
Your Current Organism:
Caldivirga maquilingensis
NCBI taxonomy Id: 397948
Other names: C. maquilingensis IC-167, Caldivirga maquilingensis DSM 13496, Caldivirga maquilingensis IC-167, Caldivirga maquilingensis JCM 10307, Caldivirga maquilingensis str. IC-167, Caldivirga maquilingensis strain IC-167
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