STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM67032.1Type II secretion system protein E (GspE). (565 aa)    
Predicted Functional Partners:
SFM67050.1
General secretion pathway protein F.
 
 0.993
SFM45541.1
Type IV pilus assembly protein PilC.
 
 0.977
SFM67068.1
General secretion pathway protein H.
  
 0.943
SFM67157.1
Hypothetical protein.
  
 
 0.926
SFM41122.1
General secretion pathway protein G.
 
 0.924
SFM59893.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.892
SFM67205.1
General secretion pathway protein D.
 
  
 0.889
SFM82444.1
Type IV pilus assembly protein PilQ.
 
 
 
 0.871
SFM67098.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
    
 0.836
SFN11165.1
Type IV pilus assembly protein PilM.
 
 
 0.830
Your Current Organism:
Thermodesulforhabdus norvegica
NCBI taxonomy Id: 39841
Other names: DSM 9990, Desulforhabdus acetothermus, T. norvegica, Thermodesulforhabdus norvegicus, strain A8444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.