STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0034PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: hypothetical protein. (768 aa)    
Predicted Functional Partners:
Bccel_0033
KEGG: AAA ATPase; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.
 
     0.957
Bccel_0035
KEGG: hypothetical protein.
       0.613
secY
Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.580
Bccel_4494
Hypothetical protein; KEGG: zinc finger SWIM domain-containing protein.
  
     0.547
Bccel_3594
KEGG: hypothetical protein.
 
 0.532
Bccel_2712
Hypothetical protein; KEGG: zinc finger SWIM domain-containing protein.
  
     0.525
Bccel_4869
PFAM: regulator of chromosome condensation RCC1; KEGG: RCC1 repeat-containing protein.
  
 0.507
Bccel_1253
KEGG: hypothetical protein.
  
 0.499
Bccel_5727
PFAM: S-layer domain-containing protein, regulator of chromosome condensation RCC1; KEGG: RCC1 repeat-containing protein.
  
 0.499
Bccel_1365
PFAM: regulator of chromosome condensation RCC1; KEGG: RCC1 repeat-containing protein.
  
 0.498
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.