STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0464KEGG: spore coat protein CotH; PFAM: Spore coat protein CotH, PKD domain containing protein; SMART: PKD/Chitinase domain-containing protein. (629 aa)    
Predicted Functional Partners:
Bccel_0525
PFAM: Spore coat protein CotH; KEGG: CotH protein; overlaps another CDS with the same product name.
  
     0.713
Bccel_1466
APHP domain protein; KEGG: cellulose 1,4-beta-cellobiosidase; PFAM: APHP domain protein, PKD domain containing protein; SMART: PKD/Chitinase domain-containing protein.
  
    0.503
Bccel_1467
KEGG: cellulose 1,4-beta-cellobiosidase; PFAM: PKD domain containing protein, Fibronectin type III domain protein; SMART: PKD/Chitinase domain-containing protein, Fibronectin type III domain protein.
  
    0.500
Bccel_1985
KEGG: PKD domain-containing protein; PFAM: PKD domain containing protein, APHP domain protein, Fibronectin type III domain protein; SMART: PKD/Chitinase domain-containing protein, Fibronectin type III domain protein.
  
    0.490
Bccel_2761
KEGG: carbohydrate binding family protein; PFAM: Carbohydrate binding family 6, S-layer domain-containing protein; SMART: cellulose binding type IV.
  
     0.476
Bccel_0507
PFAM: APHP domain protein, Hyalin, beta-lactamase domain protein; KEGG: PKD domain-containing protein.
  
    0.475
Bccel_0506
Hypothetical protein; KEGG: cellulose 1,4-beta-cellobiosidase.
  
    0.448
Bccel_5317
PFAM: protein of unknown function DUF58; KEGG: hypothetical protein.
  
     0.426
Bccel_1059
KEGG: Ig domain-containing protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin, APHP domain protein; SMART: Ig domain protein group 2 domain protein.
  
     0.415
Bccel_5664
KEGG: Ig domain-containing protein.
  
     0.403
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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