STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_0483PFAM: protein of unknown function DUF6 transmembrane; KEGG: putative permease, DMT superfamily. (294 aa)    
Predicted Functional Partners:
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.485
Bccel_0482
PFAM: Lytic transglycosylase catalytic; KEGG: soluble lytic murein transglycosylase.
       0.480
Bccel_0049
KEGG: PhoH family protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc.
  
    0.461
Bccel_3229
PFAM: protein of unknown function DUF6 transmembrane; KEGG: DMT(drug/metabolite transporter) superfamily permease.
  
     0.443
Bccel_3600
KEGG: hypothetical protein.
    
 0.422
Bccel_3963
KEGG: hypothetical protein.
    
 0.422
Bccel_1965
PFAM: peptidase M24, creatinase; KEGG: Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
    
 0.407
Bccel_5713
PFAM: peptidase M24, creatinase; KEGG: peptidase M24.
    
 0.407
Bccel_2000
KEGG: peptidase S41; PFAM: peptidase S41, Tetratricopeptide TPR_1 repeat-containing protein; SMART: peptidase S41, Tetratricopeptide repeat-containing protein.
 
 
 0.405
Bccel_0166
Undecaprenyl pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
 
 0.403
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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