STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_1308PFAM: metallophosphoesterase; KEGG: DNA repair exonuclease. (329 aa)    
Predicted Functional Partners:
Bccel_1307
Hypothetical protein; KEGG: Rad50 zinc hook domain-containing protein.
 0.999
Bccel_0383
KEGG: hypothetical protein.
 0.998
Bccel_0479
KEGG: DNA polymerase I; PFAM: 5'-3' exonuclease, resolvase-like domain-containing protein, 5'-3' exonuclease, subdomain-containing protein; SMART: 5'-3' exonuclease, Helix-hairpin-helix domain protein class 2.
  
 0.993
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.993
Bccel_2999
KEGG: hypothetical protein.
  
 0.981
Bccel_4074
Hypothetical protein; KEGG: SbcC2, DNA repair ATPase.
  
 0.981
Bccel_5393
KEGG: HRDC domain-containing protein; PFAM: DNA helicase PIF1, ATP-dependent, HRDC domain protein; SMART: HRDC domain protein, AAA ATPase.
  
 0.978
recA
Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.956
Bccel_5394
Hypothetical protein; KEGG: recQ, ATP-dependent DNA helicase.
  
 0.952
Bccel_2147
KEGG: helicase c2; PFAM: helicase c2; SMART: helicase c2.
   
 0.909
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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