STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bccel_4913PFAM: polysaccharide biosynthesis protein CapD; KEGG: polysaccharide biosynthesis protein CapD. (622 aa)    
Predicted Functional Partners:
Bccel_3887
Glutamine--scyllo-inositol transaminase; KEGG: spore coat polysaccharide biosynthesis protein SpsC; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.950
Bccel_1644
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.938
Bccel_4914
Undecaprenyl-phosphate galactose phosphotransferase; KEGG: glycosyl-1-phosphate-transferase; PFAM: sugar transferase.
 
 0.938
Bccel_1845
TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: algA, mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase, mannose-6-phosphate isomerase type II; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.925
Bccel_2227
KEGG: competence protein ComEA; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Soluble ligand binding domain-containing protein.
  
 
 0.853
Bccel_1868
TIGRFAM: capsular exopolysaccharide family; KEGG: lipopolysaccharide biosynthesis protein; PFAM: AAA domain, lipopolysaccharide biosynthesis protein.
  
 
 0.818
Bccel_1866
Nucleotide sugar dehydrogenase; SMART: UDP-glucose/GDP-mannose dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; KEGG: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase dimerization, UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 
 0.805
Bccel_1643
PFAM: sugar transferase; KEGG: UDP-galactose phosphate transferase.
 
 0.789
Bccel_1865
dTDP-glucose 4,6-dehydratase; KEGG: NAD dependent epimerase; PFAM: NAD-dependent epimerase/dehydratase.
  
 
0.766
Bccel_3792
TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
 0.747
Your Current Organism:
Pseudobacteroides cellulosolvens
NCBI taxonomy Id: 398512
Other names: Bacteroides cellulosolvens ATCC 35603, Bacteroides cellulosolvens DSM 2933, P. cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudobacteroides cellulosolvens DSM 2933 = ATCC 35603
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