STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACD15590.1KEGG: nha:Nham_3336 hypothetical protein. (109 aa)    
Predicted Functional Partners:
ACD15589.1
PFAM: peptidase U35 phage prohead HK97; KEGG: dac:Daci_4683 peptidase U35 phage prohead HK97.
 
    0.925
ACD15588.1
TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: syf:Synpcc7942_0733 phage portal protein, lambda.
 
    0.869
ACD15586.1
PFAM: terminase GpA; KEGG: syf:Synpcc7942_0731 putative phage terminase large subunit.
 
    0.841
ACD15592.1
Hypothetical protein.
       0.789
ACD15591.1
KEGG: hch:HCH_05664 hypothetical protein.
       0.773
ACD15596.1
PFAM: Prophage tail length tape measure; KEGG: aav:Aave_1628 prophage tail length tape measure.
 
    0.719
ACD15593.1
KEGG: dac:Daci_1328 hypothetical protein.
       0.644
ACD15585.1
KEGG: mgm:Mmc1_2754 hypothetical protein.
 
     0.622
ACD15584.1
KEGG: xfa:XF0515 hypothetical protein.
 
     0.548
ACD15594.1
Hypothetical protein.
       0.431
Your Current Organism:
Paraburkholderia phytofirmans
NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.